Document Type : Research Article
Graphical Abstract
Contribution to the phylogeny of Microgastrinae (Hymenoptera: Braconidae) based on mitochondrial COI and nuclear 28S rDNA genes, with comments on the identity of Pholetesor circumscriptus (Nees, 1834)
Parisa Abdoli, Ali Asghar Talebi
Department of Entomology, Faculty of Agriculture, Tarbiat Modares University, Tehran, I.R. Iran.
https://orcid.org/0000-0001-6866-0337
https://orcid.org/0000-0001-5749-6391
Nickolas G. Kavallieratos
Laboratory of Agricultural Zoology and Entomology, Department of Crop Science, Agricultural University of Athens; 75 Iera Odos str., 11855 Athens, Attica, Greece.
https://orcid.org/0000-0001-5851-5013
Rasoul Khosravi
Department of Natural Resources and Environmental Engineering, College of Agriculture, Shiraz University, Shiraz, Iran.
https://orcid.org/0000-0002-7231-563X
Farzad Bidari
Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia.
https://orcid.org/0009-0000-6953-7218
ABSTRACT. Microgastrines are diverse group of endoparasitoid wasps attacking caterpillars (Lepidoptera). Despite their importance in biological control, there is still no consensus concerning the phylogeny relationships among taxa. Although previous phylogenetic analyses have advanced the overall understanding of phylogenetic relationships of Microgastrinae, the small numbers of sampled taxa have led to disagreement in taxonomic assignments. In the present study, we performed a molecular genetic survey using both mitochondrial and nuclear data, increasing the taxons' sampling, to clarify the generic relationships and improve the inferences of the taxonomic status within Microgastrinae. We reconstructed a phylogenomic tree of Microgastrinae with sequences that exist up till now, from fifty-five genera for COI and thirty genera for 28S rDNA, both new and from previous studies. Several species and genera have been sequenced for the first time. In this study, we identified some of the closest phylogenetic relatives of Microgastrinae genera by analyzing DNA sequences from the mitochondrial COI and 28S rDNA. Most clades of the current findings correspond to the latest morphological classification of Microgastrinae. New clades and several well-supported clades, conform to the most previously recorded clades and provide an increased understanding of the Microgastrinae evolution. Based on molecular examination, Pholetesor psedocircumscriptus Abdoli, 2019 is synonymized with Pholetesor circumscriptus (Nees, 1834).
Keywords: Molecular phylogeny, DNA sequences, Bayesian method, new synonym
Citation: Abdoli, P., Talebi, A.A., Kavallieratos, N.G., Khosravi, R. & Bidari, F. (2024) Contribution to the phylogeny of Microgastrinae (Hymenoptera: Braconidae) based on mitochondrial COI and nuclear 28S rDNA genes, with comments on the identity of Pholetesor circumscriptus (Nees, 1834). Journal of Insect Biodiversity and Systematics, 10 (4), 965–981.
INTRODUCTION
Microgastrinae (Hymenoptera, Braconidae) is one the most species-rich subfamilies of Braconidae consisting of 2999 known species belonging to 81 genera across the world (Fernandez-Triana et al., 2020). Microgastrines play a crucial role as koinobiont endoparasitoids of Lepidopteran larva (Shaw & Huddleston, 1991). Despite their importance in biological control, the phylogenetic relationships within Microgastrinae still remain questionable and controversial while no comprehensive studies have investigated their phylogeny, genetic diversity, and spatial patterns. Existing molecular studies have provided inconclusive results, highlighting the monophyletic position of many microgastrine taxa, while their phylogenetic position varies depending on the utilized molecular marker and the number of sampled taxa (Belshaw et al., 1998; Pitz et al., 2007; Sharanowski et al., 2011; Shi et al., 2005; Whitfield et al., 2002, 2018; Jasso-Martinez et al., 2022).
Numerous hypotheses have been proposed regarding the phylogenetic relationships among taxa and their phylogenetic inconsistencies. Murphy et al. (2008) presented a clade comprising five subfamilies (i.e., Cardiochilinae, Khoikhoinae, Mendesellinae, Microgastrinae, and Miracinae) as a sister lineage in the family Braconidae. Whitfield et al. (2018) synthesized molecular data from various literatures to outline some generic relationships within the subfamily Microgastrinae. According their summary Microplitis, Snellenius; Cotesia, Glyptapanteles, Sathon, Venanides; Apanteles s.str., Alphomelon, Rhygoplitis; Prasmodon, Pseudapanteles; Dolichogenidea, Pholetesor (in part); Promicrogaster and Sendaphne are closely related and form a clade (Banks & Whitfield, 2006; Mardulyn & Whitfield, 1999; Whitfield et al., 2002, 2018). Previous studies have identified conflicts among molecular and morphological data within the genera of Microgastrinae, resolving only some terminal nodes (Mardulyn & Whitfield, 1999; Whitfield et al., 2002, 2018; Fernandez-Triana et al., 2020). Therefore, the investigation of the phylogenetic position of Microgastrinae genera and precisely reconstructing their phylogeny improves the overall knowledge of the phylogeny of this subfamily.
The incongruent phylogenetic relationships within Microgastrinae and the possibility of increasing the sampling of taxa have motivated researchers to conduct more studies to unravel the exact phylogenetic relationships among taxa. It has been noted that the inclusion of additional molecular markers, without a concurrent expansion of taxon sampling, may result in a diminished phylogenetic signal (Banks & Whitfield, 2006; Jantzen et al., 2019; Dong et al., 2022). On the other hand, some studies have suggested that effective taxon sampling plays a crucial role in resolving controversies in phylogenetic inference, highlighting the impact of adding specific taxa on inference performance. As more taxon sequencing data becomes available, the positioning of species within clades offers an avenue to enhance our understanding of these taxa, revealing new relationships. The availability of such new data can significantly influence hypotheses supported by phylogenetic inference, promoting researchers to formulate novel ideas about potential relationships among taxa (Rannala et al., 1998; Nabhan & Sarkar, 2012; Jantzen et al., 2019; Dong et al., 2022). The genera of Microgastrinae exhibit challenges for taxonomists due to convergent morphological characters, and complicating classification. Fernandez-Triana et al. (2020) categorized the 81 genera into three specified groups, i.e., Cotesia, Microplitis, and Apanteles, with distinct morphological diagnosis for each group. They also identified a group with unplaced genera that likely belonged elsewhere, designating it as the unplaced group. They emphasized that these groups do not represent a new phylogeny for the subfamily.
The phylogeny of Microgastrinae is challenging due to the limited genetic available data and the complexity of their evolutionary relationships. Previous studies have primarily relied on morphological data that have not fully resolved the phylogenetic relationships within this subfamily. To address these gaps and provide a comprehensive approach, we conducted an extensive phylogenetic analysis incorporating a broad range of taxa and utilized both nuclear and mitochondrial markers. The results provide a better framework for resolving the phylogenetic relationships among these poorly studied taxa. Furthermore, by comparing our molecular phylogeny with the latest morphological classification of Microgastrinae, we aim to provide new insights and potential revisions to the current understanding of their evolutionary history. Our study represents a novel effort to integrate molecular and morphological data to enhance the phylogenetic resolution of Microgastrinae.
MATERIAL AND METHODS
Sampling and morphological studies. Specimens were collected using Malaise traps from March to November in 2020 and 2021 in the north-central Iran (i.e., Alborz, Guilan, Mazandaran, Qazvin and Tehran provinces). The north-central region of Iran includes both the northern and southern slopes of Alborz Mountains. The northern slope, recognized as the southern part of the Caucasus biodiversity hotspot (Noroozi et al., 2019), comprises Guilan and Mazandaran provinces, where 16 Malaise traps were placed. In contrast, the southern slope, as a part of the Irano-Anatolian biodiversity hotspot (Noroozi et al., 2019), includes Alborz, Tehran and Qazvin provinces, where 15 Malaise traps were placed. Malaise traps were set up in a range of different habitats such as forests, rangelands and orchards to ensure the actual reflection of the biodiversity in these environments. The collected parasitoids were preserved in 70% ethanol, and subsequent identification was conducted at the genus or species level using appropriate identification keys (Telenga, 1955; Nixon, 1965; Mason, 1981; Tobias, 1986). Each specimen was examined under the Olympus™ SZX9 stereomicroscope. The results of the identification of Microgastrinae in the North-central Iran, based on the morphological characters, have been published in recent years (Abdoli et al., 2019a, 2019b, 2019c; 2021a, 2021b; 2022). The examined material is deposited in the Insect Collection of the Department of Entomology, Tarbiat Modares University, Tehran, Iran (TMUC).
Extraction and sequencing. Total genomic DNA was extracted from the legs of the individuals using the Qiagen Dneasy Blood & Tissue Kit (Qiagen, Valencia, CA, USA). The quality of the extracted DNA was determined on a 1% agarose gel and the amount of total genomic DNA was quantified using Nanodrop (Allsheng, Nano -200, China). Two molecular markers were used to reconstruct the phylogeny tree including mitochondrial Cytochrome c oxidase subunit I, COI (5′ GGTCAACAAAT CATAAAGATATTGG 3′), HCO2198 (5′ TAAACTTCAGGGTGACCA AAAAATCA 3′) (Folmer et al. 1994) and 28S nuclear ribosomal DNA, 28S rDNA (5′ AAGAGAGAGTTCAAGAGTACGTG 3′), 28S_R (5′ TAGTTCACCATCTTTCGGGTCCC 3′) (Mardulyn & Whitfield, 1999). The PCR was performed in a 25 μL solution containing 12.5 μL Master Mix, 1 μL of each primer (10 pmol μL-1), 1 μL of extracted DNA and 9.5 μL double-distilled water. The PCR was carried out in the following steps: initial denaturation at 95°C for 3 min, followed by 5 cycles of 1 minute at 94ºC, 1 minute at 45ºC, 1 minute at 72ºC, and then 35 cycles of 1 minute at 94ºC, 1 minute at 51ºC, 1 minute at 72ºC, with a final extension step at 72ºC for 5 minutes. All PCR products were directly sequenced with both primers by Bio-Magic-Gene company in Iran. The COI and 28S rDNA sequences of the specimens were deposited in GenBank and other sequences used in comprehensive phylogenetic analyses were downloaded from NCBI and BOLD System (Table 1, and Table 2).
Phylogenetic analyses. Sequence alignment was performed using MAFFT online for COI and Muscle for 28S rDNA with MEGA7 (Tamura et al., 2013). The curation of alignments was performed manually using the MEGA7 method (Castresana, 2000). Sequences of both COI and the 28S rDNA were trimmed to 660 bp. The best-fit nucleotide substitution model was determined using MrModeltest 2 (Nylander, 2004). We employed BEAST v2.7.3 using an uncorrelated lognormal relaxed clock model (Drummond et al., 2012) and the constant rate birth-death process for the prior distribution on node heights (Gernhard, 2008), with default priors. A random coalescent starting tree, using default values for demographic parameters, was used for analyses in which BEAST was allowed to infer the root position. Convergence of likelihoods and model parameters was determined using Tracer. Most runs were terminated once these measures had been stable for at least 10 million generations, with preceding generations discarded as burn-in. Maximum clade credibility trees with mean node depths were calculated in Tree Annotator v2.7.3 (Drummond & Rambaut, 2007). The trees were rooted with Miracinae as outgroup. We visualized the resulting topology using FigTree v1.4.3.
Table 1. Taxa used in the molecular analysis of COI, along with accession numbers and source or locality.
|
Taxa |
Accession number or BIN ID |
Source/locality |
|
Miracinae |
JN289534 |
French Guiana |
|
Alloplitis Nixon, 1965 |
JN659929 |
Rodriguez et el. (2013) |
|
Alphomelon Mason, 1981 |
JQ855429 |
Smith et al. (2013) |
|
Alphomelon xestopyga Deans, 2003 |
JQ855430 |
Smith et al. (2013) |
|
Apanteles Foerster, 1863 |
PQ144870 |
Present study |
|
Apanteles Foerster, 1863 |
GU141050 |
Fernandez-Triana et al. (2011a) |
|
Beyarslania insolens (Wilkinson, 1930) |
BOLD:ABV1136 |
South Africa |
|
Buluka De Saeger, 1948 |
HM430407 |
Smith et al. (2013) |
|
Choeras consimilis (Viereck, 1911) |
KR802979 |
Hebert et al. (2016) |
|
Choeras formosus Abdoli & Fernandez-Triana, 2019 |
PQ144876 |
Present study |
|
Choeras taftanensis Ghafouri Moghaddam & van Achterberg, 2018 |
PQ144877 |
Present study |
|
Choeras tiro (Reinhard, 1880) |
PQ145584 |
Present study |
|
Clarkinella Mason, 1981 |
MF929335 |
Canada |
|
Clarkinella Mason, 1981 |
JQ849626 |
Smith et al. (2013) |
|
Cotesia ruficrus (Haliday, 1834) |
HM397148 |
Smith et al. (2013) |
|
Cotesia Cameron, 1891 |
PQ144867 |
Present study |
|
Cotesia Cameron, 1891 |
PQ144868 |
Present study |
|
Dasylagon Muesebeck, 1958 |
AF102719 |
Mardulyn & Whitfield (1999) |
|
Deuterixys rimulosa (Niezabitowski, 1910) |
DQ538824 |
Banks & Whitfield (2006) |
|
Deuterixys Mason, 1981 |
MG439334 |
Canada |
|
Diolcogaster alvearia (Fabricius, 1798) |
PQ144866 |
Present study |
|
Diolcogaster alvearia (Fabricius, 1798) |
KJ459109 |
- |
|
Diolcogaster mayae (Shestakov, 1932) |
PQ152953 |
Present study |
|
Diolcogaster Ashmead, 1900 |
MH138685 |
Australia |
|
Distatrix loretta Grinter, 2009 |
BOLD:ABA9259 |
Costa Rica |
|
Distatrix papilionis (Viereck, 1912) |
KC867697 |
Smith et al. (2013) |
|
Distatrix Mason, 1981 |
JQ854979 |
Smith et al. (2013) |
|
Dolichogenidea laevigata (Ratzeburg, 1848) |
PQ144865 |
Present study |
|
Dolichogenidea fernandeztrianai Abdoli & Talebi, 2019 |
PQ144864 |
Present study |
|
Dolichogenidea Viereck, 1911 |
JF271346 |
Papua New Guinea |
|
Exoryza mariabustosae Fernandez-Triana, 2016 |
KX146409 |
Fernandez-Triana et al. (2016) |
|
Exoryza rosamatarritae Fernandez-Triana, 2016 |
KX146408 |
Fernandez-Triana et al. (2016) |
|
Fornicia Brullé, 1846 |
JQ854916 |
Smith et al. (2013) |
|
Fornicia Brullé, 1846 |
JN282333 |
Smith et al. (2013) |
|
Glyptapanteles compressiventris (Muesebeck, 1921) |
JN282008 |
Smith et al. (2013) |
|
Glyptapanteles Ashmead, 1904 |
PQ144863 |
Present study |
|
Hygroplitis melligaster (Provancher, 1886) |
KM897007 |
Fernandez-Triana et al. (2014) |
|
Hygroplitis Thomson, 1895 |
JQ855071 |
Smith et al. (2013) |
|
Hypomicrogaster Ashmead, 1898 |
KR881266 |
Hebert et al. (2016) |
|
Hypomicrogaster Ashmead, 1898 |
KC130370 |
Smith et al. (2013) |
|
Iconella radiata Abdoli & Talebi, 2020 |
PQ144875 |
Present study |
|
Iconella Mason, 1981 |
KC685309 |
Fernandez-Triana et al. (2013) |
|
Iconella Mason, 1981 |
KC685304 |
Fernandez-Triana et al. (2013) |
|
Illidops Mason, 1981 |
HM396642 |
Smith et al. (2013) |
|
Illidops Mason, 1981 |
HQ925944 |
Smith et al. (2013) |
|
Janhalacaste winnieae Fernandez-Triana and Boudreault, 2018 |
BOLD:AAK0117 |
Fernandez-Triana & Boudreault (2018) |
|
Janhalacaste danieli Fernandez-Triana and Boudreault, 2018 |
BOLD:ACB2460 |
Fernandez-Triana & Boudreault (2018) |
|
Jenopappius magyarmuzeum Fernandez-Triana & Boudreault, 2018 |
BOLD:AAH1374 |
Fernandez-Triana & Boudreault (2018) |
|
Jimwhitfieldius Fernandez-Triana, 2018 |
BOLD:AAH1239 |
Fernandez-Triana & Boudreault (2018) |
|
Kiwigaster variabilis Fernandez-Triana & Ward, 2011 |
BOLD:ACL7939 |
New Zealand |
|
Kiwigaster variabilis Fernandez-Triana and Ward, 2011 |
BOLD:ACL7939 |
Fernandez-Triana et al. (2011b) |
|
Kotenkosius tricarinatus Fernandez-Triana & Boudreault, 2018 |
BOLD:AAV2185 |
Fernandez-Triana & Boudreault (2018) |
|
Larissimus cassander Nixon, 1965 |
JQ851749 |
Smith et al. (2013) |
|
Larissimus cassander Nixon, 1965 |
JQ851749 |
Smith et al. (2013) |
|
Larissimus Nixon, 1965 |
JQ854418 |
Locality unknown |
|
Larissimus Nixon, 1965 |
JQ854418 |
Smith et al. (2013) |
|
Lathrapanteles Williams, 1985 |
JQ854802 |
Smith et al. (2013) |
|
Lathrapanteles Williams, 1985 |
HQ550264 |
Smith et al. (2013) |
|
Mariapanteles felipei Whitfield, 2012 |
BOLD:AAE8276 |
Costa Rica |
|
Mariapanteles Whitfield & Fernandez-Triana, 2012 |
BOLD:ADE4712 |
Brazil |
|
Microgaster Latreille, 1804 |
GU141238 |
Fernandez-Triana et al. (2011a) |
|
Microgaster Latreille, 1804 |
JN293671 |
Fernandez-Triana et al. (2011a) |
|
Microgaster Latreille, 1804 |
PQ144871 |
Present study |
|
Microplitis alborziensis Abdoli & Talebi, 2021 |
MN820452 |
Present study |
|
Microplitis kaszabi Papp, 1980 |
PQ144874 |
Present study |
|
Microplitis Foerster, 1863 |
HM397413 |
Smith et al. (2013) |
|
Miropotes Nixon, 1965 |
BOLD:ABX1530 |
Australia |
|
Miropotes Nixon, 1965 |
BOLD:ADM0565 |
Australia |
|
Miropotes Nixon, 1965 |
BOLD:ABA6079 |
Australia |
|
Neoclarkinella Rema & Narendran, 1996 |
HM430522 |
Smith et al. (2013) |
|
Neoclarkinella Rema & Narendran, 1996 |
HM430450 |
Smith et al. (2013) |
|
Nyereria Mason, 1981 |
HQ558996 |
Smith et al. (2013) |
|
Nyereria Mason, 1981 |
JQ848839 |
Smith et al. (2013) |
|
Papanteles Mason, 1981 |
JQ854942 |
Smith et al. (2013) |
|
Papanteles Mason, 1981 |
JQ847483 |
Smith et al. (2013) |
|
Parapanteles eros Gupta, 2014 |
KT334011 |
India |
|
Parapanteles Ashmead, 1900 |
JQ852327 |
Smith et al. (2013) |
|
Parenion kokodana (Wilkinson, 1936) |
BOLD:ABA0055 |
Papua New Guinea |
|
Parenion Nixon, 1965 |
BOLD:AAZ8941 |
New Caledonia |
|
Paroplitis Mason, 1981 |
BOLD:AAP0533 |
Germany |
|
Philoplitis Nixon, 1965 |
JN660042 |
Rodriguez et al. (2013) |
|
Philoplitis striatus Fernandez-Triana & Goulet, 2009 |
JQ846716 |
Smith et al. (2013) |
|
Pholetesor psudocircumscriptus Abdoli, 2019 |
PQ144872 |
Present study |
|
Pholetesor Mason, 1981 |
PQ144872 |
Present study |
|
Pholetesor Mason, 1981 |
KR788874 |
Hebert et al. (2016) |
|
Prasmodon Nixon, 1965 |
DQ538832 |
Banks & Whitfield (2006) |
|
Prasmodon Nixon, 1965 |
JQ854850 |
Smith et al. (2013) |
|
Promicrogaster liagrantae Fernandez-Triana & Boudreault, 2016 |
KR808817 |
Hebert et al. (2016) |
|
Promicrogaster Brues & Richardson, 1913 |
JN281691 |
Smith et al. (2013) |
|
Protapanteles Ashmead, 1898 |
KR808264 |
Hebert et al. (2016) |
|
Protapanteles Ashmead, 1898 |
GU141378 |
Fernandez-Triana et al. (2011a) |
|
Protomicroplitis Ashmead, 1898 |
HM397594 |
Smith et al. (2013) |
|
Protomicroplitis Ashmead, 1898 |
JQ848676 |
Smith et al. (2013) |
|
Pseudapanteles Ashmead, 1898 |
JN281754 |
Smith et al. (2013) |
|
Pseudapanteles Ashmead, 1898 |
KJ840799 |
Fernandez-Triana et al. (2014) |
|
Rasivalva Mason, 1981 |
JQ855198 |
Smith et al. (2013) |
|
Rasivalva Mason, 1981 |
JQ852962 |
Smith et al. (2013) |
|
Rhygoplitis Mason, 1981 |
JQ854244 |
Smith et al. (2013) |
|
Rhygoplitis Mason, 1981 |
KC755365 |
Fernandez‐Flores et al. (2013) |
|
Sathon Mason, 1981 |
HQ941789 |
Smith et al. (2013) |
|
Sathon Mason, 1981 |
JF864698 |
Canada |
|
Sendaphne Nixon, 1965 |
HQ550197 |
Smith et al. (2013) |
|
Sendaphne Nixon, 1965 |
BOLD:AAA7170 |
Fernandez‐Flores et al. (2013) |
|
Shireplitis Fernandez-Triana & Ward, 2013 |
JQ850080 |
Smith et al. (2013) |
|
Shireplitis Fernandez-Triana & Ward, 2013. |
BOLD:AAV6352 |
Smith et al. (2013) |
|
Snellenius Westwood, 1882 |
HM430408 |
Smith et al. (2013) |
|
Snellenius Westwood, 1882 |
JQ846757 |
Smith et al. (2013) |
|
Venanides caspicus Abdoli, Fernandez-Triana & Talebi, 2019 |
PQ144869 |
Present study |
|
Venanides Mason, 1981 |
JQ848252 |
Smith et al. (2013) |
|
Venanus Mason, 1981 |
JQ854847 |
Smith et al. (2013) |
|
Venanus Mason, 1981 |
KR925140 |
Hebert et al. (2016) |
|
Wilkinsonellus Mason, 1981 |
JN282230 |
Smith et al. (2013) |
|
Wilkinsonellus Mason, 1981 |
JN282286 |
Smith et al. (2013) |
|
Wilkinsonellus Mason, 1981 |
HM907598 |
Smith et al. (2013) |
|
Xanthomicrogaster Cameron, 1911 |
JQ854715 |
Smith et al. (2013) |
|
Xanthomicrogaster Cameron, 1911 |
HQ550277 |
Smith et al. (2013) |
|
Zachterbergius tenuitergum Fernandez-Triana & Boudreault, 2018 |
BOLD:AAV2126 |
Smith et al. (2013) |
Table 2. Taxa used in the molecular analysis of 28S rDNA, along with accession numbers and source or locality.
|
Taxa |
Accession number or BIN ID |
Source/locality |
|
Miracinae |
EU106929 |
Murphy et al. (2008) |
|
Alphomelon Mason, 1981 |
AF102732 |
Mardulyn & Whitfield (1999) |
|
Alphomelon Mason, 1981 |
AF102732 |
Mardulyn & Whitfield (1999) |
|
Apanteles Foerster, 1863 |
PP959388 |
Present study |
|
Apanteles Foerster, 1863 |
GU141402 |
Canada |
|
Choeras fulviventris Fernandez-Triana & Abdoli, 2019 |
PP959383 |
Present study |
|
Choeras qazviniensis Fernandez-Triana & Talebi, 2019 |
PP959382 |
Present study |
|
Choeras taftanensis Ghafouri Moghaddam & van Achterberg, 2018 |
PP959384 |
Present study |
|
Cotesia Cameron, 1891 |
PP959386 |
Present study |
|
Cotesia Cameron, 1891 |
PP959385 |
Present study |
|
Dasylagon Muesebeck, 1958 |
AF102744 |
Mardulyn & Whitfield (1999) |
|
Deuterixys rimulosa (Niezabitowski, 1910) |
AY044219 |
Whitfield et al. (2002) |
|
Deuteryxis Mason, 1981 |
PP959398 |
Present study |
|
Diolcogaster mayae (Shestakov, 1932) |
PP959381 |
Present study |
|
Dolichogenidea Viereck, 1911 |
MN645027 |
Parks et al. (2020) |
|
Exoryza yeimycedenoae Fernandez-Triana, 2016 |
MN645035 |
Parks et al. (2020) |
|
Fornicia Brullé, 1846 |
DQ538984 |
Banks & Whitfield (2006) |
|
Fornicia Brullé, 1846 |
Z97959 |
Belshaw et al. (1998) |
|
Glyptapanteles Ashmead, 1904 |
FJ396429 |
Smith et al. (2009) |
|
Glyptapanteles Ashmead, 1904 |
GU141478 |
Canada |
|
Hypomicrogaster Ashmead, 1898 |
AF102737 |
Mardulyn & Whitfield (1999) |
|
Iconella radiata Abdoli & Talebi, 2021 |
PP959396 |
Present study |
|
Iconella Mason, 1981 |
PP959395 |
Present study |
|
Illidops Mason, 1981 |
PP959397 |
Present study |
|
Microgaster canadensis Muesebeck, 1922 |
AF102733 |
Mardulyn & Whitfield (1999) |
|
Microgaster Latreille, 1804 |
PP959389 |
Present study |
|
Microplitis alborziensis Abdoli & Talebi 2021 |
PP959392 |
Present study |
|
Microplitis kaszabi Papp, 1980 |
PP959393 |
Present study |
|
Microplitis matures Weed, 1888 |
AF102727 |
Mardulyn & Whitfield (1999) |
|
Miropotes Nixon, 1965 |
AF379920 |
Dowton & Austin (2001) |
|
Miropotes Nixon, 1965 |
AY044225 |
Whitfield et al., 2002 |
|
Parapanteles Ashmead, 1900 |
MN645374 |
Parks et al. (2020) |
|
Parapanteles Ashmead, 1900 |
MN645261 |
Parks et al. (2020) |
|
Pholetesor circumscriptus (Nees 1834) |
PP959390 |
Present study |
|
Pholetesor ornigis (Weed, 1887) |
AF102736 |
Mardulyn & Whitfield (1999) |
|
Pholetesor Mason, 1981 |
PP959391 |
Present study |
|
Prasmodon eminens Nixon, 1965 |
AF102725 |
Mardulyn & Whitfield (1999) |
|
Prasmodon Nixon, 1965 |
DQ538986 |
Banks & Whitfield (2006) |
|
Promicrogaster Brues & Richardson, 1913 |
DQ538988 |
Banks & Whitfield (2006) |
|
Promicrogaster Brues & Richardson, 1913 |
DQ538987 |
Banks & Whitfield (2006) |
|
Protapanteles Ashmead, 1898 |
PP959394 |
Present study |
|
Protapanteles Ashmead, 1898 |
GU141564 |
Canada |
|
Pseudapanteles dignus (Muesebeck, 1938) |
DQ538989 |
Banks & Whitfield (2006) |
|
Pseudapanteles Ashmead, 1898 |
DQ538990 |
Banks & Whitfield (2006) |
|
Rhygoplitis Mason, 1981 |
DQ538992 |
Banks & Whitfield (2006) |
|
Sathon falcatus (Nees 1834) |
AF102746 |
Mardulyn & Whitfield (1999) |
|
Sathon falcatus (Nees 1834) |
AF029130 |
Dowton & Austin (1998) |
|
Sendaphne Nixon, 1965 |
DQ538993 |
Banks & Whitfield (2006) |
|
Snellenius Westwood, 1882 |
AF102726 |
Mardulyn & Whitfield (1999) |
|
Snellenius Westwood, 1882 |
DQ538994 |
Banks & Whitfield (2006) |
|
Venanides caspicus Abdoli, Fernandez-Triana & Talebi, 2019 |
PP959387 |
Present study |
|
Venanus minutalis (Muesebeck, 1958) |
AY044226 |
Whitfield et al. (2002) |
|
Venanus Mason, 1981 |
DQ538995 |
Banks & Whitfield (2006) |
|
Xanthomicrogaster Cameron, 1911 |
DQ538996 |
Banks & Whitfield (2006) |
Phylogenetic relationships. A phylogenetic reconstruction of the subfamily Microgastrinae using DNA sequences from Mitochondrial COI and 28S rDNA molecular markers was explored, combining both newly obtained data and information from previous studies through Bayesian methods. The best-fitting model of nucleotide substitution was determined GTR+G+I for COI and 28S rDNA sequences. Molecular data were collected from 115 specimens belonging to 55 genera for COI (18 specimens determined in this study and 97 specimens from previously published data) (Table 1) and 52 specimens from 30 genera for 28S rDNA (18 specimens identified in this study and 34 specimens from previously published data) (Table 2). The following taxa were sequenced to reconstruct phylogenetic relationships of Microgastrinae: mitochondrial COI gene of ten species, Choeras formosus Abdoli & Fernandez-Triana, 2019, Choeras taftanensis Ghafouri Moghaddam & van Achterberg, 2018, Choeras tiro (Reinhard, 1880), Iconella radiata Abdoli & Talebi, 2020, Microplitis alborziensis Abdoli & Talebi, 2021, Microplitis kaszabi Papp, 1980, Dolichogenidea Fernandeztrianai Abdoli & Talebi, 2019, Diolcogaster mayae (Shestakov, 1932), Venanides caspicus Abdoli, Fernandez-Triana & Talebi, 2019, Pholetesor pseudocircumscriptus Abdoli, 2019, two genera (Venanides, Iconella); the 28S rDNA gene of nine species, Diolcogaster mayae (Shestakov, 1932), Choeras taftanensis Ghafouri Moghaddam & van Achterberg, 2018, Choeras qazviniensis Fernandez-Triana & Talebi, 2019, Choeras fulviventris Fernandez-Triana & Abdoli, 2019, Venanides caspicus Abdoli, Fernandez-Triana & Talebi, 2019, Pholetesor psudocircumscriptus Abdoli, 2019, Microplitis alborziensis Abdoli & Talebi, 2021, Microplitis kaszabi Papp, 1980, Iconella radiata Abdoli & Talebi, 2020 (Table 1, and Table 2).
RESULTS
Taxonomic hierarchy
Order Hymenoptera Linnaeus, 1758
Family Braconidae Nees von Esenbeck, 1811
Subfamily Microgasterinae Foerster, 1863
Phylogenetic analysis. The constructed phylogenetic trees of Microgastrinae based on the COI and 28S rDNA genes are shown in Figure 1, and Figure 2, respectively. In the COI gene tree, some taxa were recovered as well-supported sister, comprising Hypomicrogaster, Apanteles, Illidops; Iconella, Neoclarkinella; Dolichogenidea, Exoriza, Parapanteles; Alphomelon, Janhalacaste, Pseudapanteles, but in a well-supported clade with Rhygoplitis, Hygroplitis, Microgaster, Papanteles, Sendaphne, Dasylagon, Promicrogaster, Paroplitis, Shireplitis, Clarkinella, Glyptapanteles, Cotesia, Protapanteles, Sathon, Lathrapanteles. Other clades that were recovered together as paraphyletic included Diolcogaster, Buluka, Protomicroplitis, Larrismus, Parenion, Xanthomicrogaster; Jimwhitfieldius, Kotenkosius, Venanus, Mariapanteles, Miropotes, Venanides; Alloplitis, Philoplitis, Prasmodon, Zachterbergius, Rasivalva, Wilkinsonellus, and Microplitis, Snellenius, Choeras, Deuterixyes, Beyarslania. In the 28S rDNA gene tree, the genera which were recovered as well-supported sister taxa included Apanteles, Illidops, Alphomelon, Pholetesor, Rhygoplitis, Iconella, Exoryza, Dolichogenidea, Parapanteles; Pseudapanteles, Prasmodon; Glyptapanteles, Cotesia, Protapanteles; Venanides, Miropotes; Deuteryxis, Xanthomicrogaster; Microplitis, Snellenius, and Sendaphne, Dasylagon, Promicrogaster.
Synonymy. The available data in NCBI (National Center for Biotechnology Information: show that P. circumscriptus (Fig. 3A) and the recently described species, P. pseudocircumscriptus (Fig. 3B), for which DNA barcodes are available, differ by only 0.78% in their nucleotide sequences (a difference of 5 base pairs, resulting 99.22% identity). This minimal genetic divergence, combined with their morphological similarities, indicated that these two taxa are the same species, despite previous differentiation based on certain morphological features ((Abdoli & Pourhaji, 2019). Therefore P. psedocircumscriptus is proposed as a new synonym of P. circumscriptus (Table 3). Notably, it is mentioned that Pholetesor circumscriptus exhibits some variation in colouration, particularly in the legs and metasomal segments, depending on the region, especially in the Old World (Whitfield, 2006).
Figure 1. Bayesian tree to reconstruct phylogenetic relationships within Microgastrinae based on COI. Bayesian posterior probabilities greater than 0.70 are shown at the nodes.
Figure 2. Bayesian tree to reconstruct phylogenetic relationships within Microgastrinae based on 28S rDNA. Bayesian posterior probabilities greater than 0.70 are shown at the nodes.
Figure 3. Habitus, lateral view of Pholetesor species (females). A. Pholetesor circumscriptus (Nees, 1834) (Bold Systems); B. Pholetesor pseudocircumscriptus Abdoli, 2019 syn. nov.
Table 3. DNA barcodes of mitochondrial cytochrome c oxidase I (COI) of two Pholetesor species (Hymenoptera: Braconidae).
|
Species |
COI sequence |
|
Pholetesor circumscriptus (Nees, 1834) |
ATTTTTTATTTGGATTATGAGCTGGTATATTAGGATTTTCAATAAGTTTAATTATTCGTTTAGAATTGGGAATACCTGGGAGTTTAATTATAAATGATCAAATTTATAATAGTATTGTTACATCTCATGCATTTATTATAATTTTTTTTATAGTTATACCTGTTATAATTGGAGGATTTGGTAATTGATTAATTCCTTTAATATTAGGTGCTCCAGATATATCATTCCCACGTATAAATAATATAAGATTTTGATTATTAATTCCTTCAATTATTATATTAATTATAAGAAGATTTATTAATGTTGGTGTTGGTACAGGTTGGACAGTTTACCCTCCTTTATCTTTAATCTTAGGTCATGGTGGTATATCAGTAGATTTAGGAATTTTTTCATTACATTTAGCTGGTGCTTCTTCAATTATAGGGGCAGTTAATTTTATTACAACAATTTTAAATATACGAACGAATTTATATAGAATAGATAAAATATCTTTATTTATTTGATCAGTTTTTATTACAGCAATTTTATTATTATTATCTTTACCAGTTTTAGCTGGTGCTATTACTATGTTATTAACTGATCGTAATCTTAATACAAGATTTTTTGATCCTGCAGGAGGTGGTGATCCTATTTTATATCAACATT |
|
Pholetesor pseudocircumscriptus Abdoli, 2019, syn. nov. |
ATTTTTTTTTTGGATTATGAGCTGGTATATTAGGATTTTCAATAAGTTTAATTATTCGTTTAGAATTGGGAATACCTGGAAGTTTAATTATAAATGATCAAATTTATAATAGTATTGTTACATCTCATGCATTTATTATAATTTTTTTTATAGTTATACCTGTTATAATTGGAGGATTTGGTAATTGATTAATTCCTTTAATATTAGGTGCTCCAGATATATCATTCCCACGTATAAATAATATAAGATTTTGATTATTAATTCCTTCAATTATTATATTAATTATAAGAAGATTTATTAATGTTGGTGTTGGTACAGGTTGGACAGTTTATCCTCCTTTATCTTTAATTTTAGGTCATGGTGGTATATCAGTAGATTTAGGAATTTTTTCATTACATTTAGCTGGTGCTTCTTCAATTATAGGGGCAGTTAATTTTATTACAACAATTTTAAATATACGAACGAATTTATATAGAATAGATAAAATATCTTTATTTATTTGATCAGTTTTTATTACAGCAATTTTATTATTATTATCTTTACCAGTTTTAGCTGGTGCTATTACTATATTATTAACTGATCGTAATCTTAATACAAGATTTTTTGATCCTGCAGGAGGTGGTGATCCTATTTTATATCAACATT |
DISCUSSION
The comparison of our phylogenetic results shows notable congruence with the topologies presented by Whitfield et al. (2002), Mardulyn & Whitfield (1999) and Banks & Whitfield (2006). studies established that Apanteles s.str., Alphomelon and Rhygoplitis form a distinct clade (Banks & Whitfield, 2006; Mardulyn & Whitfield, 1999; Whitfield et al., 2002, 2018). Our 28S rDNA gene tree supports these taxonomic assignments, placing them within a newly identified and broader clade previously consisting of Apanteles, Illidops, Alphomelon, Pholetesor, Rhygoplitis. However, the COI gene tree suggests these genera as separate entities. The relationship between Promicrogaster and Sendaphne, highlighted by Whitfield et al. (2002), is confirmed in our analyses, revealing a new and broader clade in the COI gene tree, including Microgaster, Papanteles, Sendaphne, Dasylagon, Promicrogaster, Shireplitis, Clarkinella, Hypomicrogaster. In the 28S rDNA gene tree Sendaphne, Dasylagon, Promicrogaster form a distinct clade. Similarly, the close association of Prasmodon, Pseudapanteles into a distinct clade, as observed in prior studies (Banks & Whitfield, 2006; Mardulyn & Whitfield, 1999; Whitfield et al., 2002, 2018), is confirmed by our 28S rDNA gene tree, although COI gene tree fails to recover this phylogenetic relationship. The COI gene tree introduces a novel clade comprising Glyptapanteles, Cotesia, Protapanteles, Sathon, Lathrapanteles. The 28S rDNA gene tree also recovers Glyptapanteles, Cotesia, Protapanteles as sister taxa. Previous molecular analyses suggested a distinct clade including Glyptapanteles, Cotesia and Sathon (Whitfield et al., 2002; Mardulyn & Whitfield, 1999), but didn’t include Protapanteles and Lathrapanteles. Banks & Whitfield (2006) identified a clade with Glyptapanteles, Cotesia and Venanides, whereas our study incorporates Protapanteles, Sathon and Lathrapanteles. In both the 28S rDNA and COI gene trees, Microplitis is consistently recovered as sister to Snellenius, aligning with previous studies (Whitfield et al., 2002, 2018; Mardulyn & Whitfield, 1999; Banks & Whitfield, 2006).
The findings of this study reveal a close relationship between the current molecular analysis and the morphological classification by Fernandez-Triana et al. (2020). These results validate several of their morphological classifications and clarify the positions of certain previously unplaced genera (Four genera include Clarkinella, Neoclarkinella, Miropotes and Xanthomicrogaster) that were unresolved in the morphological study. For instance, in the COI gene tree, the positions of the genera within the Apanteles group as defined by Fernandez-Triana et al. (2020) are as follows: Apanteles, Illidops; Iconella, Neoclarkinella, Hygroplitis; Dolichogenidea, Exoriza, Parapanteles; Alphomelon, Janhalacaste, Pseudapanteles; Hypomicrogaster, Microgaster, Papanteles, Sendaphne, Dasylagon, Promicrogaster, Shireplitis, Clarkinella. In the 28S rDNA gene tree, the positions are Apanteles, Illidops, Alphomelon, Pholetesor, Rhygoplitis; Iconella, Exoryza, Dolichogenidea, Parapanteles, Sendaphne, Dasylagon, Promicrogaster. These results indicate a close relationship among the genera within the Apanteles group as defined by Fernandez-Triana et al. (2020). Although the analysis did not support the formation of a comprehensive clade, it demonstrates that the members of this group are not associated with genera outside the Apanteles group. Additionally, the findings suggest that the genera Clarkinella and Neoclarkinella, previously unplaced according to Fernandez-Triana et al. (2020) are closely related to the members of this group and likely belong to the Apanteles group.
The results from the COI gene tree analysis also reveal specific relationships among the members of Cotesia group as defined by Fernandez-Triana et al. (2020). The clades are as follows: Glyptapanteles, Cotesia, Protapanteles, Sathon, Lathrapanteles; Diolcogaster, Buluka, Protomicroplitis, Larrismus, Parenion, Xanthomicrogaster; and Miropotes, Venanides. Similarly, the 28S rDNA gene tree supports the associations of Glyptapanteles, Cotesia, Protapanteles; Deuteryxis, Xanthomicrogaster; and Venanides, Miropotes. The analysis demonstrates that Miropotes and Xanthomicrogaster, previously classified as unplaced by Fernandez-Triana et al. (2020), likely belong to the Cotesia group based on current genetic evidence, and consequently, they should be considered members of this group. The results of the Bayesian analyses of COI also exposed discrepancies with the classifications proposed by Fernandez-Triana et al. (2020), indicating the need for further investigation. In the present study, the taxa Microplitis, Snellenius, Alloplitis, Philoplitis, which were previously grouped together under the Microplitis group by Fernandez-Triana et al. (2020), were found to be separated. Specifically, Microplitis and Snellenius were placed apart from the other two genera. Current Bayesian analyses revealed some strongly supported clades, introducing novel phylogenetic hypotheses within Microgastrinae. In the COI phylogenetic tree, we identified two new clades, Alloplitis, Philoplitis, Prasmodon, Zachterbergius, Rasivalva, Wilkinsonellus and Microplitis, Snellenius, Choeras, Deuterixyes, Beyarslania. These clades are particularly noteworthy because they group together genera that were previously placed in distinct categories according to the classifications by Fernandez-Triana et al. (2020). This finding suggests a potential need for revising the current taxonomic framework, as the molecular data offer a more detailed understanding of the evolutionary relationships within Microgastrinae.
However, while the branching patterns in our COI and 28S rDNA phylogenetic trees exhibit some similarities, there are notable differences, particularly in the support for certain clades. The COI analyses tend to reveal more strongly supported clades compared to the 28S rDNA analyses, likely due to a more extensive database. The differences in results highlight the impact of missing data and how genera or groups evolved from the ancestors. The COI gene is more divergent compared to 28S rDNA and provides higher resolution at the species and genus levels compared to less variable genes like 28S rDNA (Machida & Tsuda, 2010; Blanco-Bercial et al., 2011; Patwardhan et al., 2014). Therefore, we used the 28S rDNA phylogenetic tree as a complementary source of information to the COI tree. In the COI phylogenetic tree, a clade labelled as the 'unknown group' was identified, comprising genera from the Microplitis group, Cotesia group, and several genera from the unplaced group. This newly recognized clade, supported by a high posterior probability, highlights the close evolutionary relationships among these taxa.
Molecular phylogenetic studies of Microgastrinae have historically been limited, often involving only a small number of samples, which can compromise the accuracy of phylogenetic inferences. Our study provides new insights into the evolutionary relationships within this subfamily by identifying well-supported clades at shallower taxonomic levels. The inclusion of a larger number of taxa in our analysis has led to a clearer understanding of phylogenetic relationships among the genera of Microgastrinae. However, due to incomplete data from taxa, further fieldwork efforts and the integration of additional molecular markers are necessary to enhance the robustness of our taxonomic conclusions. This study also proposed that P. psedocircumscriptus should be considered a new synonym of P. circumscriptus (Table 3). Notably, it is mentioned that Pholetesor circumscriptus exhibits some variation in colouration, particularly in the legs and metasomal segments, depending on the region, especially in the Old World (Whitfield, 2006). Based on the original description, P. circumscriptus is characterized by the following set of characters: vein R1 is long, longer than pterostigma and not less than 3.00–4.00 × longer than the distance from to the apex of the wing; ovipositor valve much less expanded apically; tergite 1 length 1.50× basal width, distinctly narrowed posteriorly, posterior width not more than one-third of basal width, and smooth posteriorly; posterior width of tergite 2, 1.50× (less than 2.00×) its medial length; anterior margin of postscutellum between the forwards-pointing projection and mid-point of postscutellum concave and phragma of scutellum strongly revealed, tergites 1–3 black or blackish, less frequently orange or yellow; body length about 1.80–2.00 mm (Nees, 1834). In P. psudocircumscriptus Tergite 1 shallowly rugulose posteriorly, the length of tergite I 1.80× basal width; posterior width of tergite II, 2.00× its medial length; Tergites II-II and basal half of Tergite III yellow; body length 1.40–1.50 mm (Abdoli & Pourhaji, 2019). Previous comprehensive studies on other species of Microgastrinae such as Microplitis ceratomiae Riley, 1881 (Ghafouri Moghaddam et al., 2021) and Microplitis manilae Ashmead, 1904 (Ghafouri Moghaddam & Butcher, 2023) revealed that the specimens show intraspecific variations in size and/or colour. Ecological factors play an important role in morphological differences which are common among populations of the same species (Pan et al., 2018). Furthermore, in braconid parasitoids with a wide host range, such as Habrobracon hebetor (Say, 1836), different hosts with varying sizes affect the size of wasp adults (Abou El-Ela et al., 2021).
Molecular methods are crucial for accurately identifying closely related species and distinguishing morphologically similar but genetically distinct species (Sharanowski et al., 2011). These techniques offer a level of precision that is often unattainable through traditional morphological approaches, effectively resolving taxonomic ambiguities and enhancing our understanding of species diversity (Belshaw & Quicke, 2002; Whitfield, 2002).
AUTHOR′S CONTRIBUTION
The authors confirm their contribution to the paper as follows: P. Abdoli: performed lab work, data curation, computational analyses, compiling the literature, drafting the manuscript; A.A. Talebi: conceived and designed the study, conceptualization, supervising, organizing the collection, editing and proofreading; N.G. Kavallieratos: conceived and designed the study, revised and edited previous and final version of this manuscript; R. Khosravi: computational analyses, revised and edited previous and final version of this manuscript; F. Bidari: performed lab work, data curation and computational analyses. All authors read and approved the final version of the manuscript.
FUNDING
This work has been supported by the center for International Scientific Studies & Collaboration (CISSC), Ministry of Science Research and Technology, Islamic Republic of Iran (Project No: 991215).
AVAILABILITY OF DATA AND MATERIAL
The COI and 28S rDNA sequence data of the specimens that support the findings of this study were deposited in the NCBI (GenBank accession numbers in Tables 1 and 2).
ETHICS APPROVAL AND CONSENT TO PARTICIPATE
This study only included arthropod material, and all required ethical guidelines for the treatment and use of animals were strictly adhered to in accordance with international, national, and institutional regulations. No human participants were involved in any studies conducted by the authors for this article.
CONSENT FOR PUBLICATION
Not applicable.
CONFLICT OF INTERESTS
The authors declare that there is no conflict of interest regarding the publication of this paper.
ACKNOWLEDGMENTS
Thanks to Insect Collection of the Department of Entomology, Tarbiat Modares University, Tehran, Iran (TMUC) for providing facilities. Special thanks to Dr Majid Pedram, Dr Mohammad Mehrabadi and Mr Ehsan Baradaran for their guidance on this study. We cordially thank the editor and two anonymous reviewers for their critical reviews and constructive comments which significantly improved the paper.
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